PT - JOURNAL ARTICLE AU - Stefano Lazzarano AU - Marek Kučka AU - João P. L. Castro AU - Ronald Naumann AU - Paloma Medina AU - Michael N. C. Fletcher AU - Rebecka Wombacher AU - Joost Gribnau AU - Tino Hochepied AU - Claude Libert AU - Yingguang Frank Chan TI - Genetic mapping of species differences via “<em>in vitro</em> crosses” in mouse embryonic stem cells AID - 10.1101/148486 DP - 2017 Jan 01 TA - bioRxiv PG - 148486 4099 - http://biorxiv.org/content/early/2017/06/10/148486.short 4100 - http://biorxiv.org/content/early/2017/06/10/148486.full AB - Discovering the genetic changes underlying species differences is a central goal in evolutionary genetics. However, hybrid crosses between species in mammals often suffer from hybrid sterility, greatly complicating genetic dissection of trait variation. Here we describe a simple, robust and transgene-free technique to make “in vitro crosses” in hybrid mouse embryonic stem cells by inducing random mitotic crossovers with the drug ML216, which inhibits Bloom syndrome (BLM). Starting with an interspecific hybrid (between Mus musculus and Mus spretus) embryonic stem cell line spanning 1.5 million years of divergence, we demonstrate the feasibility of mapping enzymatic differences across species within weeks and the possibility of re-deriving whole mice. Our work shows how in vitro crosses can overcome major bottlenecks like hybrid sterility in traditional mouse breeding to address fundamental questions in evolutionary biology.Impact Statement By mixing hybrid mouse genomes in stem cells via mitotic recombination, genetic mapping and hybrid mosaic mice can be achieved in weeks, even across species barriers.