RT Journal Article SR Electronic T1 A platform for efficient transgenesis in Macrostomum lignano, a flatworm model organism for stem cell research JF bioRxiv FD Cold Spring Harbor Laboratory SP 151654 DO 10.1101/151654 A1 Jakub Wudarski A1 Daniil Simanov A1 Kirill Ustyantsev A1 Katrien de Mulder A1 Margriet Grelling A1 Magda Grudniewska A1 Frank Beltman A1 Lisa Glazenburg A1 Turan Demircan A1 Julia Wunderer A1 Weihong Qi A1 Dita B. Vizoso A1 Philipp M. Weissert A1 Daniel Olivieri A1 Stijn Mouton A1 Victor Guryev A1 Aziz Aboobaker A1 Lukas Schärer A1 Peter Ladurner A1 Eugene Berezikov YR 2017 UL http://biorxiv.org/content/early/2017/06/18/151654.abstract AB Regeneration-capable flatworms are informative research models to study the mechanisms of stem cell regulation, regeneration and tissue patterning. However, the lack of transgenesis methods significantly hampers their wider use. Here we report development of a transgenesis method for Macrostomum lignano, a basal flatworm with excellent regeneration capacity. We demonstrate that microinjection of DNA constructs into fertilized one-cell stage eggs, followed by a low dose of irradiation, frequently results in random integration of the transgene in the genome and its stable transmission through the germline. To facilitate selection of promoter regions for transgenic reporters, we assembled and annotated the M. lignano genome, including genome-wide mapping of transcription start regions, and showed its utility by generating multiple stable transgenic lines expressing fluorescent proteins under several tissue-specific promoters. The reported transgenesis method and annotated genome sequence will permit sophisticated genetic studies on stem cells and regeneration using M. lignano as a model organism.