User profiles for Collin Tokheim
Collin TokheimResearch Fellow, Dana-Farber Cancer Institute Verified email at mail.dfci.harvard.edu Cited by 5363 |
[PDF][PDF] Comprehensive characterization of cancer driver genes and mutations
Identifying molecular cancer drivers is critical for precision oncology. Multiple advanced
algorithms to identify drivers now exist, but systematic attempts to combine and optimize them on …
algorithms to identify drivers now exist, but systematic attempts to combine and optimize them on …
The genomic landscape of response to EGFR blockade in colorectal cancer
…, B Lupo, M Sausen, J Phallen, CA Hruban, C Tokheim… - Nature, 2015 - nature.com
Colorectal cancer is the third most common cancer worldwide, with 1.2 million patients
diagnosed annually. In late-stage colorectal cancer, the most commonly used targeted therapies …
diagnosed annually. In late-stage colorectal cancer, the most commonly used targeted therapies …
Evaluating the evaluation of cancer driver genes
CJ Tokheim, N Papadopoulos… - Proceedings of the …, 2016 - National Acad Sciences
Sequencing has identified millions of somatic mutations in human cancers, but distinguishing
cancer driver genes remains a major challenge. Numerous methods have been developed …
cancer driver genes remains a major challenge. Numerous methods have been developed …
[PDF][PDF] Perspective on oncogenic processes at the end of the beginning of cancer genomics
The Cancer Genome Atlas (TCGA) has catalyzed systematic characterization of diverse
genomic alterations underlying human cancers. At this historic junction marking the completion …
genomic alterations underlying human cancers. At this historic junction marking the completion …
Minimal functional driver gene heterogeneity among untreated metastases
Metastases are responsible for the majority of cancer-related deaths. Although genomic
heterogeneity within primary tumors is associated with relapse, heterogeneity among treatment-…
heterogeneity within primary tumors is associated with relapse, heterogeneity among treatment-…
[PDF][PDF] Systematic functional annotation of somatic mutations in cancer
The functional impact of the vast majority of cancer somatic mutations remains unknown,
representing a critical knowledge gap for implementing precision oncology. Here, we report the …
representing a critical knowledge gap for implementing precision oncology. Here, we report the …
Therapeutically increasing MHC-I expression potentiates immune checkpoint blockade
MHC-I loss or downregulation in cancer cells is a major mechanism of resistance to T cell–based
immunotherapies. Our study reveals that birinapant may be used for patients with low …
immunotherapies. Our study reveals that birinapant may be used for patients with low …
[HTML][HTML] In vivo CRISPR screens identify the E3 ligase Cop1 as a modulator of macrophage infiltration and cancer immunotherapy target
Despite remarkable clinical efficacy of immune checkpoint blockade (ICB) in cancer treatment,
ICB benefits for triple-negative breast cancer (TNBC) remain limited. Through pooled in …
ICB benefits for triple-negative breast cancer (TNBC) remain limited. Through pooled in …
[PDF][PDF] Pan-cancer proteogenomics connects oncogenic drivers to functional states
Cancer driver events refer to key genetic aberrations that drive oncogenesis; however, their
exact molecular mechanisms remain insufficiently understood. Here, our multi-omics pan-…
exact molecular mechanisms remain insufficiently understood. Here, our multi-omics pan-…
Exome-scale discovery of hotspot mutation regions in human cancer using 3D protein structure
The impact of somatic missense mutation on cancer etiology and progression is often difficult
to interpret. One common approach for assessing the contribution of missense mutations in …
to interpret. One common approach for assessing the contribution of missense mutations in …