Evidence of directional and stabilizing selection in contemporary humans

JS Sanjak, J Sidorenko, MR Robinson… - Proceedings of the …, 2018 - National Acad Sciences
Modern molecular genetic datasets, primarily collected to study the biology of human health
and disease, can be used to directly measure the action of natural selection and reveal …

Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication

Y Zhou, M Massonnet, JS Sanjak… - Proceedings of the …, 2017 - National Acad Sciences
We gathered genomic data from grapes (Vitis vinifera ssp. vinifera), a clonally propagated
perennial crop, to address three ongoing mysteries about plant domestication. The first is the …

[HTML][HTML] A model of compound heterozygous, loss-of-function alleles is broadly consistent with observations from complex-disease GWAS datasets

JS Sanjak, AD Long, KR Thornton - PLoS genetics, 2017 - journals.plos.org
The genetic component of complex disease risk in humans remains largely unexplained. A
corollary is that the allelic spectrum of genetic variants contributing to complex disease risk is …

[HTML][HTML] Seroconversion and fever are dose-dependent in a nonhuman primate model of inhalational COVID-19

…, J Biryukov, K Beck, JA Boydston, JS Sanjak… - PLoS …, 2021 - journals.plos.org
While evidence exists supporting the potential for aerosol transmission of SARS-CoV-2, the
infectious dose by inhalation remains unknown. In the present study, the probability of …

[HTML][HTML] Analysis of lncRNA-miRNA-mRNA expression pattern in heart tissue after total body radiation in a mouse model

…, A Shankardass, L MacMillan, L Sun, J Sanjak… - Journal of Translational …, 2021 - Springer
Background Radiation therapy is integral to effective thoracic cancer treatments, but its
application is limited by sensitivity of critical organs such as the heart. The impacts of acute …

[HTML][HTML] Precision information extraction for rare disease epidemiology at scale

WZ Kariampuzha, G Alyea, S Qu, J Sanjak… - Journal of translational …, 2023 - Springer
Background The United Nations recently made a call to address the challenges of an estimated
300 million persons worldwide living with a rare disease through the collection, analysis, …

[HTML][HTML] Whole blood gene expression within days after total-body irradiation predicts long term survival in Gottingen minipigs

S Chopra, M Moroni, J Sanjak, L MacMillan, B Hritzo… - Scientific Reports, 2021 - nature.com
Gottingen minipigs mirror the physiological radiation response observed in humans and
hence make an ideal candidate model for studying radiation biodosimetry for both limited-sized …

[HTML][HTML] Integrative rare disease biomedical profile based network supporting drug repurposing or repositioning, a case study of glioblastoma

E McGowan, J Sanjak, EA Mathé, Q Zhu - Orphanet Journal of Rare …, 2023 - Springer
Background Glioblastoma (GBM) is the most aggressive and common malignant primary
brain tumor; however, treatment remains a significant challenge. This study aims to identify …

Clustering rare diseases within an ontology-enriched knowledge graph

J Sanjak, J Binder, AS Yadaw, Q Zhu… - Journal of the …, 2024 - academic.oup.com
Objective Identifying sets of rare diseases with shared aspects of etiology and pathophysiology
may enable drug repurposing. Toward that aim, we utilized an integrative knowledge …

Revised Annotations, Sex-Biased Expression, and Lineage-Specific Genes in the Drosophila melanogaster Group

RL Rogers, L Shao, JS Sanjak… - G3: Genes …, 2014 - academic.oup.com
Here, we provide revised gene models for D. ananassae, D. yakuba, and D. simulans, which
include untranslated regions and empirically verified intron-exon boundaries, as well as …