User profiles for Joshua J. Coon

Joshua J. Coon

Professor of Chemistry and Biomolecular Chemistry, U. Of Wisconsin
Verified email at chem.wisc.edu
Cited by 33450

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

JEP Syka, JJ Coon, MJ Schroeder… - Proceedings of the …, 2004 - National Acad Sciences
Peptide sequence analysis using a combination of gas-phase ion/ion chemistry and tandem
mass spectrometry (MS/MS) is demonstrated. Singly charged anthracene anions transfer an …

[PDF][PDF] Large-scale multi-omic analysis of COVID-19 severity

…, S Swanson, DF Mosher, R Stewart, JJ Coon… - Cell systems, 2021 - cell.com
We performed RNA-seq and high-resolution mass spectrometry on 128 blood samples from
COVID-19-positive and COVID-19-negative patients with diverse disease severities and …

[HTML][HTML] Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics

…, JD Russell, DJ Bailey, MS Westphall, JJ Coon - Molecular & cellular …, 2012 - ASBMB
Selected reaction monitoring on a triple quadrupole mass spectrometer is currently experiencing
a renaissance within the proteomics community for its, as yet, unparalleled ability to …

Formic-acid-induced depolymerization of oxidized lignin to aromatics

A Rahimi, A Ulbrich, JJ Coon, SS Stahl - Nature, 2014 - nature.com
Lignin is a heterogeneous aromatic biopolymer that accounts for nearly 30% of the organic
carbon on Earth 1 and is one of the few renewable sources of aromatic chemicals 2 . As the …

[PDF][PDF] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome

…, TA Prolla, F Assadi-Porter, S Roy, JM Denu, JJ Coon - Molecular cell, 2013 - cell.com
Calorie restriction (CR) extends life span in diverse species. Mitochondria play a key role in
CR adaptation; however, the molecular details remain elusive. We developed and applied a …

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

…, C Huttenhower, LY Geer, JJ Coon… - Proceedings of the …, 2007 - National Acad Sciences
We present a strategy for the analysis of the yeast phosphoproteome that uses endo-Lys C
as the proteolytic enzyme, immobilized metal affinity chromatography for phosphopeptide …

The utility of ETD mass spectrometry in proteomic analysis

…, A Chi, JJ Coon, JEP Syka, J Shabanowitz… - … et Biophysica Acta (BBA …, 2006 - Elsevier
Mass spectrometry has played an integral role in the identification of proteins and their post-translational
modifications (PTM). However, analysis of some PTMs, such as phosphorylation…

[HTML][HTML] The one hour yeast proteome

…, A Ulbrich, EE Coughlin, MS Westphall, JJ Coon - Molecular & Cellular …, 2014 - ASBMB
We describe the comprehensive analysis of the yeast proteome in just over one hour of
optimized analysis. We achieve this expedited proteome characterization with improved sample …

Protein identification using sequential ion/ion reactions and tandem mass spectrometry

JJ Coon, B Ueberheide, JEP Syka… - Proceedings of the …, 2005 - National Acad Sciences
A method for rapid sequencing of intact proteins simultaneously from the N and C termini (1–2
s) with online chromatography is described and applied to the characterization of histone …

[HTML][HTML] Global detection of human variants and isoforms by deep proteome sequencing

…, MS Westphall, BJ Blencowe, J Cox, JJ Coon - Nature …, 2023 - nature.com
An average shotgun proteomics experiment detects approximately 10,000 human proteins
from a single sample. However, individual proteins are typically identified by peptide …