User profiles for Karim Gharbi
Karim GharbiEarlham Institute Verified email at earlham.ac.uk Cited by 9445 |
Deciphering mollusc shell production: the roles of genetic mechanisms through to ecology, aquaculture and biomimetics
Most molluscs possess shells, constructed from a vast array of microstructures and architectures.
The fully formed shell is composed of calcite or aragonite. These CaCO 3 crystals form …
The fully formed shell is composed of calcite or aragonite. These CaCO 3 crystals form …
How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
RNA-seq is now the technology of choice for genome-wide differential gene expression
experiments, but it is not clear how many biological replicates are needed to ensure valid …
experiments, but it is not clear how many biological replicates are needed to ensure valid …
A Microsatellite Linkage Map of Rainbow Trout (Oncorhynchus mykiss) Characterized by Large Sex-Specific Differences in Recombination Rates
T Sakamoto, RG Danzmann, K Gharbi, P Howard… - Genetics, 2000 - academic.oup.com
We constructed a genetic linkage map for a tetraploid derivative species, the rainbow trout (Oncorhynchus
mykiss), using 191 microsatellite, 3 RAPD, 7 ESMP, and 7 allozyme markers …
mykiss), using 191 microsatellite, 3 RAPD, 7 ESMP, and 7 allozyme markers …
Special features of RAD Sequencing data: implications for genotyping
Restriction site‐associated DNA Sequencing ( RAD ‐Seq) is an economical and efficient
method for SNP discovery and genotyping. As with other sequencing‐by‐synthesis methods, …
method for SNP discovery and genotyping. As with other sequencing‐by‐synthesis methods, …
The effect of RAD allele dropout on the estimation of genetic variation within and between populations
Inexpensive short‐read sequencing technologies applied to reduced representation genomes
is revolutionizing genetic research, especially population genetics analysis, by allowing …
is revolutionizing genetic research, especially population genetics analysis, by allowing …
[HTML][HTML] Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)
Background Dense single nucleotide polymorphism (SNP) genotyping arrays provide
extensive information on polymorphic variation across the genome of species of interest. Such …
extensive information on polymorphic variation across the genome of species of interest. Such …
Comparative genome analysis of the primary sex-determining locus in salmonid fishes
RA Woram, K Gharbi, T Sakamoto, B Hoyheim… - Genome …, 2003 - genome.cshlp.org
We compared the Y-chromosome linkage maps for four salmonid species (Arctic charr,
Salvelinus alpinus; Atlantic salmon, Salmo salar; brown trout, Salmo trutta; and rainbow trout,…
Salvelinus alpinus; Atlantic salmon, Salmo salar; brown trout, Salmo trutta; and rainbow trout,…
Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genotyping
Molecular markers produced by next‐generation sequencing ( NGS ) technologies are
revolutionizing genetic research. However, the costs of analysing large numbers of individual …
revolutionizing genetic research. However, the costs of analysing large numbers of individual …
[HTML][HTML] Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array
HY Tsai, A Hamilton, AE Tinch, DR Guy, K Gharbi… - BMC genomics, 2015 - Springer
Background The genetic architecture of complex traits in farmed animal populations is of
interest from a scientific and practical perspective. The use of genetic markers to predict the …
interest from a scientific and practical perspective. The use of genetic markers to predict the …
[HTML][HTML] Mapping and Validation of the Major Sex-Determining Region in Nile Tilapia (Oreochromis niloticus L.) Using RAD Sequencing
Sex in Oreochromis niloticus (Nile tilapia) is principally determined by an XX/XY locus but
other genetic and environmental factors also influence sex ratio. Restriction Associated DNA (…
other genetic and environmental factors also influence sex ratio. Restriction Associated DNA (…