User profiles for Katherine S. Pollard

Katherine S Pollard

Director, Gladstone Institute of Data Science & Biotechnology / UCSF
Verified email at gladstone.ucsf.edu
Cited by 46619

Detection of nonneutral substitution rates on mammalian phylogenies

KS Pollard, MJ Hubisz, KR Rosenbloom… - Genome …, 2010 - genome.cshlp.org
Methods for detecting nucleotide substitution rates that are faster or slower than expected
under neutral drift are widely used to identify candidate functional elements in genomic …

[HTML][HTML] A communal catalogue reveals Earth's multiscale microbial diversity

…, A Clauset, RL Stevens, A Shade, KS Pollard… - Nature, 2017 - nature.com
Our growing awareness of the microbial world’s importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …

[HTML][HTML] A unified catalog of 204,938 reference genomes from the human gut microbiome

…, F Strozzi, M Beracochea, ZJ Shi, KS Pollard… - Nature …, 2021 - nature.com
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …

[PDF][PDF] Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy

…, B Joehnk, K Walcott, A Sil, C Langelier, KS Pollard… - Cell, 2021 - cell.com
The December 2019 outbreak of a novel respiratory virus, SARS-CoV-2, has become an
ongoing global pandemic due in part to the challenge of identifying symptomatic, asymptomatic, …

[HTML][HTML] A high-resolution map of human evolutionary constraint using 29 mammals

…, D Haussler, A Siepel, N Goldman, KS Pollard… - Nature, 2011 - nature.com
The comparison of related genomes has emerged as a powerful lens for genome interpretation.
Here we report the sequencing and comparative analysis of 29 eutherian genomes. We …

An RNA gene expressed during cortical development evolved rapidly in humans

KS Pollard, SR Salama, N Lambert, MA Lambot… - Nature, 2006 - nature.com
The developmental and evolutionary mechanisms behind the emergence of human-specific
brain features remain largely unknown. However, the recent ability to compare our genome …

American gut: an open platform for citizen science microbiome research

…, TT Nguyen, S Peddada, P Pevzner, KS Pollard… - Msystems, 2018 - Am Soc Microbiol
Although much work has linked the human microbiome to specific phenotypes and lifestyle
variables, data from different projects have been challenging to integrate and the extent of …

[HTML][HTML] Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

…, GM Keller, D Srivastava, SS Levine, KS Pollard… - Cell, 2012 - cell.com
Heart development is exquisitely sensitive to the precise temporal regulation of thousands
of genes that govern developmental decisions during differentiation. However, we currently …

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

…, R Swofford, KS Pollard… - Proceedings of the …, 2020 - National Acad Sciences
The novel coronavirus severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the
cause of COVID-19. The main receptor of SARS-CoV-2, angiotensin I converting enzyme 2 …

[HTML][HTML] New insights from uncultivated genomes of the global human gut microbiome

S Nayfach, ZJ Shi, R Seshadri, KS Pollard… - Nature, 2019 - nature.com
The genome sequences of many species of the human gut microbiome remain unknown,
largely owing to challenges in cultivating microorganisms under laboratory conditions. Here …