User profiles for Koen J. van Benthem

Koen J. van Benthem

Groningen University
Verified email at ieu.uzh.ch
Cited by 7635

glmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling

ME Brooks, K Kristensen, KJ Van Benthem… - The R …, 2017 - research-collection.ethz.ch
Count data can be analyzed using generalized linear mixed models when observations are
correlated in ways that require random effects. However, count data are often zero-inflated, …

Modeling zero-inflated count data with glmmTMB

ME Brooks, K Kristensen, KJ van Benthem… - BioRxiv, 2017 - biorxiv.org
Ecological phenomena are often measured in the form of count data. These data can be
analyzed using generalized linear mixed models (GLMMs) when observations are correlated in …

Disentangling evolutionary, plastic and demographic processes underlying trait dynamics: a review of four frameworks

KJ van Benthem, M Bruijning, T Bonnet… - Methods in Ecology …, 2017 - Wiley Online Library
Biologists are increasingly interested in decomposing trait dynamics into underlying processes,
such as evolution, plasticity and demography. Four important frameworks that allow for …

How individualized niches arise: defining mechanisms of niche construction, niche choice, and niche conformance

…, U Krohs, KJ Van Benthem, UR Ernst, J Gadau… - …, 2022 - academic.oup.com
Organisms interact with their environments in various ways. We present a conceptual
framework that distinguishes three mechanisms of organism–environment interaction. We call …

Shifts between cooperation and antagonism driven by individual variation: a systematic synthesis review

…, E Takola, PC Trimmer, KJ van Benthem, J Winternitz… - Oikos, 2022 - Wiley Online Library
The outcomes of interspecific and intraspecific ecological interactions can be considered to
fall along continua from cooperative (mutually beneficial) to antagonistic (detrimental to one …

Density feedbacks mediate effects of environmental change on population dynamics of a semidesert rodent

CR Nater, KJ van Benthem, CI Canale… - Journal of Animal …, 2018 - Wiley Online Library
Population dynamics are the result of an interplay between extrinsic and intrinsic environmental
drivers. Predicting the effects of environmental change on wildlife populations therefore …

A low cost approach to estimate demographic rates using inverse modeling

…, A Giménez, E Graciá, KJ van Benthem… - Biological …, 2019 - Elsevier
Survival is a key parameter in species' management and conservation. Most methods for
estimating survival require time series data, large sample sizes and, overall, costly monitoring …

Trait–demography relationships underlying small mammal population fluctuations

KJ van Benthem, H Froy, T Coulson… - Journal of Animal …, 2017 - Wiley Online Library
Large‐scale fluctuations in abundance are a common feature of small mammal populations
and have been the subject of extensive research. These demographic fluctuations are often …

Are generic early-warning signals reliable indicators of population collapse in rotifers?

S Sommer, KJ van Benthem, D Fontaneto, A Ozgul - Hydrobiologia, 2017 - Springer
Timely identification of endangered populations is vital to save them from extirpation. Here
we tested whether six commonly used early-warning metrics are useful predictors of …

Multi‐scale effects of habitat loss and the role of trait evolution

R Bagawade, KJ van Benthem… - Ecology and …, 2024 - Wiley Online Library
Habitat loss (HL) is a major cause of species extinctions. Although the effects of HL beyond
the directly impacted area have been previously observed, they have not been modelled …