The application of multi-omics and systems biology to identify therapeutic targets in chronic kidney disease
K Cisek, M Krochmal, J Klein… - Nephrology Dialysis …, 2016 - academic.oup.com
The quest for the ideal therapeutic target in chronic kidney disease (CKD) has been riddled
with many obstacles stemming from the molecular complexity of the disease and its co-…
with many obstacles stemming from the molecular complexity of the disease and its co-…
Comparison of urine and plasma peptidome indicates selectivity in renal peptide handling
…, M Pejchinovski, J Siwy, M Krochmal… - PROTEOMICS …, 2018 - Wiley Online Library
Purpose Urine is considered to be produced predominantly as a result of plasma filtration in
the kidney. However, the origin of the native peptides present in urine has never been …
the kidney. However, the origin of the native peptides present in urine has never been …
Omics databases on kidney disease: where they can be found and how to benefit from them
T Papadopoulos, M Krochmal, K Cisek… - Clinical kidney …, 2016 - academic.oup.com
In the recent decades, the evolution of omics technologies has led to advances in all biological
fields, creating a demand for effective storage, management and exchange of rapidly …
fields, creating a demand for effective storage, management and exchange of rapidly …
[HTML][HTML] Urinary peptidomics analysis reveals proteases involved in diabetic nephropathy
M Krochmal, G Kontostathi, P Magalhães… - Scientific reports, 2017 - nature.com
Mechanisms underlying the onset and progression of nephropathy in diabetic patients are
not fully elucidated. Deregulation of proteolytic systems is a known path leading to disease …
not fully elucidated. Deregulation of proteolytic systems is a known path leading to disease …
Urinary glycopeptide analysis for the investigation of novel biomarkers
I Belczacka, M Pejchinovski, M Krochmal… - PROTEOMICS …, 2019 - Wiley Online Library
Purpose Urine is a rich source of potential biomarkers, including glycoproteins. Glycoproteomic
analysis remains difficult due to the high heterogeneity of glycans. Nevertheless, recent …
analysis remains difficult due to the high heterogeneity of glycans. Nevertheless, recent …
[HTML][HTML] Urinary proteome signature of Renal Cysts and Diabetes syndrome in children
P Ricci, P Magalhães, M Krochmal, M Pejchinovski… - Scientific Reports, 2019 - nature.com
Renal Cysts and Diabetes Syndrome (RCAD) is an autosomal dominant disorder caused by
mutations in the HNF1B gene encoding for the transcriptional factor hepatocyte nuclear …
mutations in the HNF1B gene encoding for the transcriptional factor hepatocyte nuclear …
Urinary peptidomics in kidney disease and drug research
M Krochmal, JP Schanstra… - Expert opinion on drug …, 2018 - Taylor & Francis
Introduction: Due to its close connection with the renal system, urine is considered a valuable
source of information in kidney disease research. Peptidomics methods focus on the …
source of information in kidney disease research. Peptidomics methods focus on the …
Deep learning and association rule mining for predicting drug response in cancer. A personalised medicine approach
A major challenge in cancer treatment is predicting the clinical response to anti-cancer drugs
for each individual patient. For complex diseases such as cancer, characterized by high …
for each individual patient. For complex diseases such as cancer, characterized by high …
[HTML][HTML] Identification of novel molecular signatures of IgA nephropathy through an integrative-omics analysis
M Krochmal, K Cisek, S Filip, K Markoska, C Orange… - Scientific reports, 2017 - nature.com
IgA nephropathy (IgAN) is the most prevalent among primary glomerular diseases worldwide.
Although our understanding of IgAN has advanced significantly, its underlying biology and …
Although our understanding of IgAN has advanced significantly, its underlying biology and …
[HTML][HTML] Urinary peptide panel for prognostic assessment of bladder cancer relapse
M Krochmal, KEM van Kessel, EC Zwarthoff… - Scientific reports, 2019 - nature.com
Non-invasive tools stratifying bladder cancer (BC) patients according to the risk of relapse
are urgently needed to guide clinical intervention. As a follow-up to the previously published …
are urgently needed to guide clinical intervention. As a follow-up to the previously published …