Motivation Metagenomics leads to major advances in microbial ecology and biologists need
user friendly tools to analyze their data on their own. Results This Galaxy-supported pipeline…

Interaction network between tree and fungal species. This file contains: •The adjacency
matrix of interactions between tree and fungal species. •The list of the tree species. •The list of …

Alterations in gut microbiota composition and diversity were suggested to play a role in the
development of obesity, a chronic subclinical inflammatory condition. We here evaluated the …

Gut microbiota is involved in the development of several chronic diseases, including diabetes,
obesity, and cancer, through its interactions with the host organs. It has been suggested …

Predicting resource allocation between cell processes is the primary step towards decoding
the evolutionary constraints governing bacterial growth under various conditions. …

Background Large scale metagenomic projects aim to extract biodiversity knowledge between
different environmental conditions. Current methods for comparing microbial communities …

Background Viral metagenomic studies have suggested a role for bacteriophages in
intestinal dysbiosis associated with several human diseases. However, interpretation of viral …

To study the evolution of several quantitative traits, the classical phylogenetic comparative
framework consists of a multivariate random process running along the branches of a …

Networks provide a natural yet statistically grounded way to depict and understand how a
set of entities interact. However, in many situations interactions are not directly observed and …

Abundance and specificity are two key characteristics of species distribution and biodiversity.
Theories of species assembly aim to reproduce the empirical joint patterns of specificity …