User profiles for Romy Chakraborty

Romy Chakraborty

Lawrence Berkeley National Laboratory
Verified email at lbl.gov
Cited by 7399

Deep-sea oil plume enriches indigenous oil-degrading bacteria

…, C Spier, J Baelum, M Auer, ML Zemla, R Chakraborty… - Science, 2010 - science.org
The biological effects and expected fate of the vast amount of oil in the Gulf of Mexico from
the Deepwater Horizon blowout are unknown owing to the depth and magnitude of this event. …

Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas

JD Coates, R Chakraborty, JG Lack, SM O'Connor… - Nature, 2001 - nature.com
Benzene contamination is a significant problem. It is used in a wide range of manufacturing
processes and is a primary component of petroleum-based fuels. Benzene is a hydrocarbon …

Mutant phenotypes for thousands of bacterial genes of unknown function

…, Z Esquivel, H Sadeeshkumar, R Chakraborty… - Nature, 2018 - nature.com
One-third of all protein-coding genes from bacterial genomes cannot be annotated with a
function. Here, to investigate the functions of these genes, we present genome-wide mutant …

Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil Spill in the Gulf of Mexico

EA Dubinsky, ME Conrad, R Chakraborty… - … science & technology, 2013 - ACS Publications
The Deepwater Horizon oil spill produced large subsurface plumes of dispersed oil and gas
in the Gulf of Mexico that stimulated growth of psychrophilic, hydrocarbon degrading bacteria…

Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

J Bælum, S Borglin, R Chakraborty… - Environmental …, 2012 - Wiley Online Library
The Deepwater Horizon oil spill resulted in a massive influx of hydrocarbons into the Gulf of
Mexico (the Gulf). To better understand the fate of the oil, we enriched and isolated …

Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration

JD Coates, KA Cole, R Chakraborty… - Applied and …, 2002 - Am Soc Microbiol
Previous studies have demonstrated that reduced humic substances (HS) can be reoxidized
by anaerobic bacteria such as Geobacter, Geothrix, and Wolinella species with a suitable …

Anaerobic Degradation of Benzene, Toluene, Ethylbenzene, and Xylene Compounds by Dechloromonas Strain RCB

R Chakraborty, SM O'Connor, E Chan… - Applied and …, 2005 - Am Soc Microbiol
Dechloromonas strain RCB has been shown to be capable of anaerobic degradation of
benzene coupled to nitrate reduction. As a continuation of these studies, the metabolic versatility …

[HTML][HTML] Exometabolite niche partitioning among sympatric soil bacteria

…, E Hummel, UN Da Rocha, R Chakraborty… - Nature …, 2015 - nature.com
Soils are arguably the most microbially diverse ecosystems. Physicochemical properties have
been associated with the maintenance of this diversity. Yet, the role of microbial substrate …

[HTML][HTML] Anaerobic benzene biodegradation—a new era

JD Coates, R Chakraborty, MJ McInerney - Research in Microbiology, 2002 - Elsevier
Benzene is biodegraded in the absence of oxygen under a variety of terminal electron-accepting
conditions. However, the mechanism by which anaerobic benzene degradation occurs …

[HTML][HTML] Systems biology approach to bioremediation

R Chakraborty, CH Wu, TC Hazen - Current Opinion in Biotechnology, 2012 - Elsevier
Bioremediation has historically been approached as a ‘black box’ in terms of our fundamental
understanding. Thus it succeeds and fails, seldom without a complete understanding of …