User profiles for Sergey Stolyar

Sergey Stolyar(Stoliar)

Senior Research Scientist, Institute for Systems Biology, Seattle WA
Verified email at systemsbiology.org
Cited by 3152

Metabolic modeling of a mutualistic microbial community

S Stolyar, S Van Dien, KL Hillesland… - Molecular systems …, 2007 - embopress.org
The rate of production of methane in many environments depends upon mutualistic interactions
between sulfate‐reducing bacteria and methanogens. To enhance our understanding of …

Methylophilaceae link methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis

…, T Wang, M Hackett, SM Stolyar… - Environmental …, 2009 - Wiley Online Library
In this work we assessed the potential for the denitrification linked to methanol consumption
in a microbial community inhabiting the top layer of the sediment of a pristine lake, Lake …

Experimental protein mixture for validating tandem mass spectral analysis

…, S Purvine, AI Nesvizhskii, S Stolyar… - Omics: a journal of …, 2002 - liebertpub.com
Several methods have been used to identify peptides that correspond to tandem mass spectra.
In this work, we describe a data set of low energy tandem mass spectra generated from a …

Transcriptome analysis of Escherichia coli using high‐density oligonucleotide probe arrays

B Tjaden, RM Saxena, S Stolyar… - Nucleic acids …, 2002 - academic.oup.com
Microarrays traditionally have been used to analyze the expression behavior of large
numbers of coding transcripts. Here we present a comprehensive approach for high‐throughput …

The Electron Transfer System of Syntrophically Grown Desulfovibrio vulgaris

…, JD Wall, AP Arkin, TC Hazen, S Stolyar… - Journal of …, 2009 - Am Soc Microbiol
Interspecies hydrogen transfer between organisms producing and consuming hydrogen
promotes the decomposition of organic matter in most anoxic environments. Although …

Multiplex Genome Editing by Natural Transformation (MuGENT) for Synthetic Biology in Vibrio natriegens

TN Dalia, CA Hayes, S Stolyar, CJ Marx… - ACS synthetic …, 2017 - ACS Publications
Vibrio natriegens has recently emerged as an alternative to Escherichia coli for molecular
biology and biotechnology, but low-efficiency genetic tools hamper its development. Here, we …

[HTML][HTML] Complete genome sequences of six strains of the genus Methylobacterium

…, N Mikhailova, M Nolan, T Woyke, S Stolyar… - 2012 - Am Soc Microbiol
The complete and assembled genome sequences were determined for six strains of the
alphaproteobacterial genus Methylobacterium, chosen for their key adaptations to different …

[HTML][HTML] Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC …

TT Vu, SM Stolyar, GE Pinchuk, EA Hill… - PLoS computational …, 2012 - journals.plos.org
Genome-scale metabolic models have proven useful for answering fundamental questions
about metabolic capabilities of a variety of microorganisms, as well as informing their …

Functional responses of methanogenic archaea to syntrophic growth

…, EL Hendrickson, MP Joachimiak, S Stolyar… - The ISME …, 2012 - academic.oup.com
Methanococcus maripaludis grown syntrophically with Desulfovibrio vulgaris was compared
with M. maripaludis monocultures grown under hydrogen limitation using transcriptional, …

[HTML][HTML] Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria

IA Rodionova, X Li, V Thiel, S Stolyar… - Frontiers in …, 2013 - frontiersin.org
L-rhamnose (L-Rha) is a deoxy-hexose sugar commonly found in nature. L-Rha catabolic
pathways were previously characterized in various bacteria including Escherichia coli. …