User profiles for Shai Carmi

Shai Carmi

The Hebrew University of Jerusalem
Verified email at mail.huji.ac.il
Cited by 7145

[HTML][HTML] Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins

S Carmi, KY Hui, E Kochav, X Liu, J Xue… - Nature …, 2014 - nature.com
The Ashkenazi Jewish (AJ) population is a genetic isolate close to European and Middle
Eastern groups, with genetic diversity patterns conducive to disease mapping. Here we report …

Identity inference of genomic data using long-range familial searches

Y Erlich, T Shor, I Pe'er, S Carmi - Science, 2018 - science.org
Consumer genomics databases have reached the scale of millions of individuals. Recently,
law enforcement authorities have exploited some of these databases to identify suspects via …

[PDF][PDF] Genome-wide data from medieval German Jews show that the Ashkenazi founder event pre-dated the 14th century

…, S Schiffels, H Ringbauer, K Sczech, S Carmi… - Cell, 2022 - cell.com
We report genome-wide data from 33 Ashkenazi Jews (AJ), dated to the 14 th century, obtained
following a salvage excavation at the medieval Jewish cemetery of Erfurt, Germany. The …

[PDF][PDF] The genomic history of the bronze age southern levant

…, Y Govrin, Y Erel, B Yakir, R Pinhasi, S Carmi… - Cell, 2020 - cell.com
We report genome-wide DNA data for 73 individuals from five archaeological sites across
the Bronze and Iron Ages Southern Levant. These individuals, who share the "Canaanite" …

Environment dominates over host genetics in shaping human gut microbiota

…, M Lotan-Pompan, A Weinberger, Z Halpern, S Carmi… - Nature, 2018 - nature.com
Human gut microbiome composition is shaped by multiple factors but the relative contribution
of host genetics remains elusive. Here we examine genotype and microbiome data from …

A model of Internet topology using k-shell decomposition

S Carmi, S Havlin, S Kirkpatrick… - Proceedings of the …, 2007 - National Acad Sciences
We study a map of the Internet (at the autonomous systems level), by introducing and using
the method of k-shell decomposition and the methods of percolation theory and fractal …

[PDF][PDF] Screening human embryos for polygenic traits has limited utility

…, L Kruglyak, G Atzmon, M Lam, T Lencz, S Carmi - Cell, 2019 - cell.com
The increasing proportion of variance in human complex traits explained by polygenic
scores, along with progress in preimplantation genetic diagnosis, suggests the possibility of …

[HTML][HTML] The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution

NG Kolev, JB Franklin, S Carmi, H Shi… - PLoS …, 2010 - journals.plos.org
The genome of Trypanosoma brucei, the causative agent of African trypanosomiasis, was
published five years ago, yet identification of all genes and their transcripts remains to be …

Functional variants in the LRRK2 gene confer shared effects on risk for Crohn's disease and Parkinson's disease

…, N Pankratz, NY Hsu, LS Chuang, S Carmi… - Science translational …, 2018 - science.org
Crohn’s disease (CD), a form of inflammatory bowel disease, has a higher prevalence in
Ashkenazi Jewish than in non-Jewish European populations. To define the role of …

Epidemic threshold for the susceptible-infectious-susceptible model on random networks

R Parshani, S Carmi, S Havlin - Physical review letters, 2010 - APS
We derive an analytical expression for the critical infection rate rc of the susceptible-infectious-susceptible
(SIS) disease spreading model on random networks. To obtain rc, we first …