User profiles for Sonia Timberlake
Sonia TimberlakeMIT Verified email at mit.edu Cited by 1957 |
Population genomics of early events in the ecological differentiation of bacteria
Genetic exchange is common among bacteria, but its effect on population diversity during
ecological differentiation remains controversial. A fundamental question is whether …
ecological differentiation remains controversial. A fundamental question is whether …
[HTML][HTML] Unlocking short read sequencing for metagenomics
S Rodrigue, AC Materna, SC Timberlake… - PloS one, 2010 - journals.plos.org
Background Different high-throughput nucleic acid sequencing platforms are currently
available but a trade-off currently exists between the cost and number of reads that can be …
available but a trade-off currently exists between the cost and number of reads that can be …
Fecal microbiota transplantation in patients with primary sclerosing cholangitis: a pilot clinical trial
…, M Smith, Y Gerardin, S Timberlake… - Official journal of the …, 2019 - journals.lww.com
BACKGROUND: Primary sclerosing cholangitis (PSC) is a cholestatic liver disease with no
effective medical therapies. A perturbation of the gut microbiota has been described in …
effective medical therapies. A perturbation of the gut microbiota has been described in …
DNA phosphorothioation is widespread and quantized in bacterial genomes
…, OX Cordero, M Cutler, S Timberlake… - Proceedings of the …, 2011 - National Acad Sciences
Phosphorothioate (PT) modification of DNA, with sulfur replacing a nonbridging phosphate
oxygen, was recently discovered as a product of the dnd genes found in bacteria and archaea…
oxygen, was recently discovered as a product of the dnd genes found in bacteria and archaea…
Hierarchical clustering can identify B cell clones with high confidence in Ig repertoire sequencing data
…, KD Adams, AW Briggs, SC Timberlake… - The Journal of …, 2017 - journals.aai.org
Adaptive immunity is driven by the expansion, somatic hypermutation, and selection of B
cell clones. Each clone is the progeny of a single B cell responding to Ag, with diversified Ig …
cell clones. Each clone is the progeny of a single B cell responding to Ag, with diversified Ig …
[HTML][HTML] Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes
Adaptive radiations are important drivers of niche filling, since they rapidly adapt a single clade
of organisms to ecological opportunities. Although thought to be common for animals and …
of organisms to ecological opportunities. Although thought to be common for animals and …
Acute neuroprotective synergy of erythropoietin and insulin-like growth factor I
…, G Garden, S Timberlake… - Proceedings of the …, 2004 - National Acad Sciences
Erythropoietin (EPO) and insulin-like growth factor I (IGF-I) are cytokines that inhibit neuronal
apoptosis. However, their maximal antiapoptotic effect, even at high concentrations, is …
apoptosis. However, their maximal antiapoptotic effect, even at high concentrations, is …
Fecal Microbiota Transplantation Capsules with Targeted Colonic Versus Gastric Delivery in Recurrent Clostridium difficile Infection: A Comparative Cohort Analysis …
…, A Gentile, Y Gerardin, S Timberlake… - Digestive diseases and …, 2019 - Springer
Background Fecal microbiota transplantation (FMT) is an effective therapy for recurrent
Clostridium. difficile infection (rCDI). FMT capsules have emerged, and it is unknown if delivery …
Clostridium. difficile infection (rCDI). FMT capsules have emerged, and it is unknown if delivery …
[HTML][HTML] Exploration of immunoglobulin transcriptomes from mice immunized with three-finger toxins and phospholipases A2 from the Central American coral snake …
Snakebite envenomings represent a neglected public health issue in many parts of the rural
tropical world. Animal-derived antivenoms have existed for more than a hundred years and …
tropical world. Animal-derived antivenoms have existed for more than a hundred years and …
Merging taxonomy with ecological population prediction in a case study of Vibrionaceae
We synthesized population structure data from three studies that assessed the fine-scale
distribution of Vibrionaceae among temporally and spatially distinct environmental categories …
distribution of Vibrionaceae among temporally and spatially distinct environmental categories …