User profiles for Yuanning Li

Yuanning Li (李远宁)

- Verified email at email.sdu.edu.cn - Cited by 1341

Yuanning Li

- Verified email at shanghaitech.edu.cn - Cited by 464

[PDF][PDF] A genome-scale phylogeny of the kingdom Fungi

Y Li, JL Steenwyk, Y Chang, Y Wang, TY James… - Current Biology, 2021 - cell.com
Phylogenomic studies using genome-scale amounts of data have greatly improved
understanding of the tree of life. Despite the diversity, ecological significance, and biomedical and …

Mitogenomics reveals phylogeny and repeated motifs in control regions of the deep-sea family Siboglinidae (Annelida)

Y Li, KM Kocot, C Schander, SR Santos… - Molecular phylogenetics …, 2015 - Elsevier
Deep-sea tubeworms in the annelid family Siboglinidae have drawn considerable interest
regarding their ecology and evolutionary biology. As adults, they lack a digestive tract and rely …

[HTML][HTML] Human cortical encoding of pitch in tonal and non-tonal languages

Y Li, C Tang, J Lu, J Wu, EF Chang - Nature communications, 2021 - nature.com
Languages can use a common repertoire of vocal sounds to signify distinct meanings. In
tonal languages, such as Mandarin Chinese, pitch contours of syllables distinguish one word …

[HTML][HTML] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference

JL Steenwyk, TJ Buida III, Y Li, XX Shen, A Rokas - PLoS biology, 2020 - journals.plos.org
Highly divergent sites in multiple sequence alignments (MSAs), which can stem from erroneous
inference of homology and saturation of substitutions, are thought to negatively impact …

Incongruence in the phylogenomics era

JL Steenwyk, Y Li, X Zhou, XX Shen… - Nature Reviews Genetics, 2023 - nature.com
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …

Group-sensitive multiple kernel learning for object categorization

J Yang, Y Li, Y Tian, L Duan… - 2009 IEEE 12th …, 2009 - ieeexplore.ieee.org
In this paper, we propose a group-sensitive multiple kernel learning (GS-MKL) method to
accommodate the intra-class diversity and the inter-class correlation for object categorization. …

Rooting the animal tree of life

Y Li, XX Shen, B Evans, CW Dunn… - Molecular Biology and …, 2021 - academic.oup.com
Identifying our most distant animal relatives has emerged as one of the most challenging
problems in phylogenetics. This debate has major implications for our understanding of the …

[HTML][HTML] Dynamic encoding of face information in the human fusiform gyrus

AS Ghuman, NM Brunet, Y Li, RO Konecky… - Nature …, 2014 - nature.com
Humans’ ability to rapidly and accurately detect, identify and classify faces under variable
conditions derives from a network of brain regions highly tuned to face information. The …

Decoding and synthesizing tonal language speech from brain activity

…, H Yu, Y Zhu, J Zhang, L Bu, X Zhang, J Lu, Y Li… - Science …, 2023 - science.org
Recent studies have shown that the feasibility of speech brain-computer interfaces (BCIs)
as a clinically valid treatment in helping nontonal language patients with communication …

PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data

JL Steenwyk, TJ Buida III, AL Labella, Y Li… - …, 2021 - academic.oup.com
Motivation Diverse disciplines in biology process and analyze multiple sequence alignments
(MSAs) and phylogenetic trees to evaluate their information content, infer evolutionary …