User profiles for D. C. Ilut

Daniel C Ilut

Invitae
Verified email at cornell.edu
Cited by 1625

[HTML][HTML] Defining loci in restriction-based reduced representation genomic data from nonmodel species: sources of bias and diagnostics for optimal clustering

DC Ilut, ML Nydam, MP Hare - BioMed research international, 2014 - hindawi.com
Next generation sequencing holds great promise for applications of phylogeography,
landscape genetics, and population genomics in wild populations of nonmodel species, but the …

Novel loci underlie natural variation in vitamin E levels in maize grain

…, J Cepela, A Mesberg, PJ Bradbury, DC Ilut… - The Plant …, 2017 - academic.oup.com
Tocopherols, tocotrienols, and plastochromanols (collectively termed tocochromanols) are
lipid-soluble antioxidants synthesized by all plants. Their dietary intake, primarily from seed …

A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA‐seq in plant species

DC Ilut, JE Coate, AK Luciano… - American journal of …, 2012 - Wiley Online Library
• Premise of the study: RNA‐seq analysis of plant transcriptomes poses unique challenges
due to the highly duplicated nature of plant genomes. We address these challenges in the …

A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction

…, SP Deshpande, MA Gore, R Gupta, DC Ilut… - The Plant …, 2020 - Wiley Online Library
Successful management and utilization of increasingly large genomic datasets is essential
for breeding programs to accelerate cultivar development. To help with this, we developed a …

Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain

CH Diepenbrock, DC Ilut… - The Plant …, 2021 - academic.oup.com
Vitamin A deficiency remains prevalent in parts of Asia, Latin America, and sub-Saharan
Africa where maize (Zea mays) is a food staple. Extensive natural variation exists for …

[HTML][HTML] Floral gene resources from basal angiosperms for comparative genomics research

…, DE Soltis, JE Carlson, WG Farmerie, PK Wall, DC Ilut… - BMC plant biology, 2005 - Springer
Background The Floral Genome Project was initiated to bridge the genomic gap between the
most broadly studied plant model systems. Arabidopsis and rice, although now completely …

[HTML][HTML] Genome-wide analysis of the omega-3 fatty acid desaturase gene family in Gossypium

OP Yurchenko, S Park, DC Ilut, JJ Inmon… - BMC plant biology, 2014 - Springer
Background The majority of commercial cotton varieties planted worldwide are derived from
Gossypium hirsutum, which is a naturally occurring allotetraploid produced by interspecific …

Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus

DC Ilut, AE Lipka, N Jeong, DN Bae, DH Kim… - Theoretical and Applied …, 2016 - Springer
Key message Discovery of new germplasm sources and identification of haplotypes for the
durable Soybean mosaic virus resistance gene, Rsv 4, provide novel resources for map-…

A century of guayule: Comprehensive genetic characterization of the US national guayule (Parthenium argentatum A. Gray) germplasm collection

DC Ilut, PL Sanchez, TA Coffelt, JM Dyer… - Industrial crops and …, 2017 - Elsevier
The fragility of a single-source, geographically concentrated supply of natural rubber, a critical
material of the modern economy, has brought guayule (Parthenium argentatum A. Gray) …

rAmpSeq: Using repetitive sequences for robust genotyping

ES Buckler, DC Ilut, X Wang, T Kretzschmar, M Gore… - BioRxiv, 2016 - biorxiv.org
Repetitive sequences have been used for DNA fingerprinting and genotyping for more than
a quarter century. Now, with our knowledge of whole genome sequences, repetitive …