Integrating discovery-driven proteomics and selected reaction monitoring to develop a noninvasive assay for geoduck reproductive maturation

EB Timmins-Schiffman, GA Crandall… - Journal of Proteome …, 2017 - ACS Publications
Geoduck clams (Panopea generosa) are an increasingly important fishery and aquaculture
product along the eastern Pacific coast from Baja California, Mexico, to Alaska. These long-…

[HTML][HTML] Temporal proteomic profiling reveals insight into critical developmental processes and temperature-influenced physiological response differences in a bivalve …

…, B Eudeline, B Vadopalas, EB Timmins-Schiffman… - BMC genomics, 2020 - Springer
Background Protein expression patterns underlie physiological processes and phenotypic
differences including those occurring during early development. The Pacific oyster (…

Genomic resource development for shellfish of conservation concern

EB TimminsSchiffman, CS Friedman… - Molecular ecology …, 2013 - Wiley Online Library
Effective conservation of threatened species depends on the ability to assess organism
physiology and population demography. To develop genomic resources to better understand the …

Resilience in a time of stress: revealing the molecular underpinnings of coral survival following thermal bleaching events

BL Nunn, T Brown, EB Timmins-Schiffman, M Mudge… - bioRxiv, 2024 - biorxiv.org
Coral bleaching events from thermal stress are increasing globally in duration, frequency, and
intensity. Bleaching occurs when a coral's algal symbionts are expelled, resulting in a loss …

Correction: Temporal proteomic profiling reveals insight into critical developmental processes and temperature-influenced physiological response differences in a …

…, EB Timmins-Schiffman… - BMC …, 2023 - bmcgenomics.biomedcentral.com
Following publication of the original article [1], the first author would like to update her name.
The past author’s name is: Shelly A. Trigg The current author’s name is: Shelly A. …

[HTML][HTML] Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors

KH Tisthammer, E Timmins-Schiffman, FO Seneca… - Scientific Reports, 2021 - nature.com
Corals in nearshore marine environments are increasingly exposed to reduced water quality,
which is the primary local threat to Hawaiian coral reefs. It is unclear if corals surviving in …

Diel metabolic patterns revealed by in situ transcriptome and proteome in a vertically migratory copepod

AE Maas, E TimminsSchiffman, AM Tarrant… - Molecular …, 2024 - Wiley Online Library
Zooplankton undergo a diel vertical migration (DVM) which exposes them to gradients of light,
temperature, oxygen, and food availability on a predictable daily schedule. Disentangling …

Variations in copepod proteome and respiration rate in association with diel vertical migration and circadian cycle

…, A Lo, AM Tarrant, E Timmins-Schiffman - The Biological …, 2018 - journals.uchicago.edu
… The analysis was performed using an enrichment tool developed in-house and described in
Timmins-Schiffman et al. (2017). Briefly, a P-value was calculated describing the enrichment …

[HTML][HTML] Proteomic response of early juvenile Pacific oysters (Crassostrea gigas) to temperature

…, B Eudeline, B Vadopalas, E Timmins-Schiffman… - Peerj, 2022 - peerj.com
Pacific oysters (Crassostrea gigas) are a valuable aquaculture product that provides important
ecosystem benefits. Among other threats, climate-driven changes in ocean temperature …

[HTML][HTML] Larval Geoduck (Panopea generosa) Proteomic Response to Ciliates

E Timmins-Schiffman, JM Guzmán… - Scientific reports, 2020 - nature.com
The innate immune response is active in invertebrate larvae from early development.
Induction of immune response pathways may occur as part of the natural progression of larval …