User profiles for I. Xenarios
 | Ioannis XenariosUNIL/CHUV/Health2030 Genome Center Verified email at unil.ch Cited by 55114 |
Protein function in the post-genomic era
Faced with the avalanche of genomic sequences and data on messenger RNA expression,
biological scientists are confronting a frightening prospect: piles of information but only flakes …
biological scientists are confronting a frightening prospect: piles of information but only flakes …
The minimum information about a proteomics experiment (MIAPE)
Both the generation and the analysis of proteomics data are now widespread, and high-throughput
approaches are commonplace. Protocols continue to increase in complexity as …
approaches are commonplace. Protocols continue to increase in complexity as …
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data
A major goal of proteomics is the complete description of the protein interaction network
underlying cell physiology. A large number of small scale and, more recently, large-scale …
underlying cell physiology. A large number of small scale and, more recently, large-scale …
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Individual resources can join ProteomeXchange by implementing the ProteomeXchange
data submission and dissemination guidelines, and metadata requirements. In the current …
data submission and dissemination guidelines, and metadata requirements. In the current …
New and continuing developments at PROSITE
…, A Bridge, L Bougueleret, I Xenarios - Nucleic acids …, 2012 - academic.oup.com
PROSITE ( http://prosite.expasy.org/ ) consists of documentation entries describing protein
domains, families and functional sites, as well as associated patterns and profiles to identify …
domains, families and functional sites, as well as associated patterns and profiles to identify …
ExPASy: SIB bioinformatics resource portal
…, N Redaschi, G Rossier, I Xenarios… - Nucleic acids …, 2012 - academic.oup.com
ExPASy ( http://www.expasy.org ) has worldwide reputation as one of the main bioinformatics
resources for proteomics. It has now evolved, becoming an extensible and integrative …
resources for proteomics. It has now evolved, becoming an extensible and integrative …
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
I Xenarios, L Salwinski, XJ Duan, P Higney… - Nucleic acids …, 2002 - academic.oup.com
The Database of Interacting Proteins (DIP: http://dip.doe-mbi.ucla.edu ) is a database that
documents experimentally determined protein–protein interactions. It provides the scientific …
documents experimentally determined protein–protein interactions. It provides the scientific …
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
This article introduces a new interface for T-Coffee, a consistency-based multiple sequence
alignment program. This interface provides an easy and intuitive access to the most popular …
alignment program. This interface provides an easy and intuitive access to the most popular …
InterPro in 2017—beyond protein family and domain annotations
InterPro ( http://www.ebi.ac.uk/interpro/ ) is a freely available database used to classify
protein sequences into families and to predict the presence of important domains and sites. …
protein sequences into families and to predict the presence of important domains and sites. …
The InterPro protein families database: the classification resource after 15 years
…, N Redaschi, C Rivoire, I Xenarios… - Nucleic acids …, 2015 - academic.oup.com
The InterPro database ( http://www.ebi.ac.uk/interpro/ ) is a freely available resource that can
be used to classify sequences into protein families and to predict the presence of important …
be used to classify sequences into protein families and to predict the presence of important …