[HTML][HTML] Translating RNA sequencing into clinical diagnostics: opportunities and challenges

…, DM Engelthaler, JD Carpten… - Nature Reviews …, 2016 - nature.com
… For example, plasma samples have high levels of transcripts released from the liver and
heart, while saliva has abundant transcripts from salivary glands and the oesophagus (KRVK-J., …

Toward precision medicine in glioblastoma: the promise and the challenges

…, JA Kiefer, ME Berens, DW Craig, JD Carpten… - Neuro …, 2015 - academic.oup.com
Integrated sequencing strategies have provided a broader understanding of the genomic
landscape and molecular classifications of multiple cancer types and have identified various …

Heterogeneity of genetic alterations in prostate cancer: evidence of the complex nature of the disease

V Nwosu, J Carpten, JM Trent… - Human molecular …, 2001 - academic.oup.com
Prostate cancer is a complex, multifactorial disease with genetic and environmental factors
involved in its etiology. The search for genetic determinants involved in the disease has …

Molecular classification of cutaneous malignant melanoma by gene expression profiling

…, J Lueders, A Glatfelter, P Pollock, J Carpten… - Nature, 2000 - nature.com
The most common human cancers are malignant neoplasms of the skin 1 , 2 . Incidence of
cutaneous melanoma is rising especially steeply, with minimal progress in non-surgical …

[HTML][HTML] Initial genome sequencing and analysis of multiple myeloma

…, D Voet, W Winckler, T Zimmerman, J Carpten, J Trent… - Nature, 2011 - nature.com
Multiple myeloma is an incurable malignancy of plasma cells, and its pathogenesis is poorly
understood. Here we report the massively parallel sequencing of 38 tumour genomes and …

[PDF][PDF] REVEL: an ensemble method for predicting the pathogenicity of rare missense variants

…, EM Lange, J Schleutker, JD Carpten… - The American Journal of …, 2016 - cell.com
The vast majority of coding variants are rare, and assessment of the contribution of rare
variants to complex traits is hampered by low statistical power and limited functional data. …

[HTML][HTML] The secreted glycoprotein lubricin protects cartilage surfaces and inhibits synovial cell overgrowth

…, H Wang, ML Warman, JD Carpten - The Journal of …, 2005 - Am Soc Clin Investig
The long-term integrity of an articulating joint is dependent upon the nourishment of its cartilage
component and the protection of the cartilage surface from friction-induced wear. Loss-of-…

[PDF][PDF] Promiscuous mutations activate the noncanonical NF-κB pathway in multiple myeloma

…, M Barrett, R Valdez, J Trent, AK Stewart, J Carpten… - Cancer cell, 2007 - cell.com
Activation of NF-κB has been noted in many tumor types, however only rarely has this been
linked to an underlying genetic mutation. An integrated analysis of high-density …

A transforming mutation in the pleckstrin homology domain of AKT1 in cancer

JD Carpten, AL Faber, C Horn, GP Donoho, SL Briggs… - Nature, 2007 - nature.com
Although AKT1 (v-akt murine thymoma viral oncogene homologue 1) kinase is a central
member of possibly the most frequently activated proliferation and survival pathway in cancer, …

Modulation of Non-Templated Nucleotide Addition by Taq DNA Polymerase: Primer Modifications that Facilitate Genotyping

MJ Brownstein, JD Carpten, JR Smith - Biotechniques, 1996 - Future Science
Taq DNA polymerase can catalyze nontemplated addition of a nucleotide (principally adenosine)
to the 3′ end of PCR-amplified products. Recently, we showed that this activity, which …