User profiles for N. Sonnenschein
Nikolaus SonnenscheinGinkgo Bioworks Verified email at ginkgobioworks.com Cited by 3441 |
A community-driven global reconstruction of human metabolism
Multiple models of human metabolism have been reconstructed, but each represents only a
subset of our knowledge. Here we describe Recon 2, a community-driven, consensus '…
subset of our knowledge. Here we describe Recon 2, a community-driven, consensus '…
[HTML][HTML] Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways
Escher is a web application for visualizing data on biological pathways. Three key features
make Escher a uniquely effective tool for pathway visualization. First, users can rapidly …
make Escher a uniquely effective tool for pathway visualization. First, users can rapidly …
MEMOTE for standardized genome-scale metabolic model testing
To the Editor—Reconstructing metabolic reaction networks enables the development of
testable hypotheses of an organism’s metabolism under different conditions 1. State-of-the-art …
testable hypotheses of an organism’s metabolism under different conditions 1. State-of-the-art …
[HTML][HTML] A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
Genome-scale metabolic models (GEMs) represent extensive knowledgebases that provide
a platform for model simulations and integrative analysis of omics data. This study …
a platform for model simulations and integrative analysis of omics data. This study …
[HTML][HTML] Systems biology solutions for biochemical production challenges
ASL Hansen, RM Lennen, N Sonnenschein… - Current opinion in …, 2017 - Elsevier
… The majority of the metabolic engineering studies using omics data focus on common
biofuels that are produced natively (eg, ethanol, n-butanol or fatty acids) or on platform strains …
biofuels that are produced natively (eg, ethanol, n-butanol or fatty acids) or on platform strains …
The Jewish‐Palestinian encounter in a time of crisis
R Halabi, N Sonnenschein - Journal of Social Issues, 2004 - Wiley Online Library
For over two decades the School for Peace at Neve Shalom/Wahat al‐Salam has been
bringing together Jews and Arabs for dialogue workshops. This article examines the unique …
bringing together Jews and Arabs for dialogue workshops. This article examines the unique …
[HTML][HTML] Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
Genome-scale metabolic models (GEMs) have been widely used for quantitative exploration
of the relation between genotype and phenotype. Streamlined integration of enzyme …
of the relation between genotype and phenotype. Streamlined integration of enzyme …
[HTML][HTML] Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies
…, MMM Bisschops, N Sonnenschein… - Nature …, 2022 - nature.com
When conditions change, unicellular organisms rewire their metabolism to sustain cell
maintenance and cellular growth. Such rewiring may be understood as resource re-allocation …
maintenance and cellular growth. Such rewiring may be understood as resource re-allocation …
[HTML][HTML] Personalized whole-cell kinetic models of metabolism for discovery in genomics and pharmacodynamics
Understanding individual variation is fundamental to personalized medicine. Yet interpreting
complex phenotype data, such as multi-compartment metabolomic profiles, in the context of …
complex phenotype data, such as multi-compartment metabolomic profiles, in the context of …
[HTML][HTML] Analysis of genetic variation and potential applications in genome-scale metabolic modeling
…, MJ Herrgård, N Sonnenschein - … in bioengineering and …, 2015 - frontiersin.org
Genetic variation is the motor of evolution and allows organisms to overcome the environmental
challenges they encounter. It can be both beneficial and harmful in the process of …
challenges they encounter. It can be both beneficial and harmful in the process of …