User profiles for N. Sonnenschein

Nikolaus Sonnenschein

Ginkgo Bioworks
Verified email at ginkgobioworks.com
Cited by 3441

A community-driven global reconstruction of human metabolism

…, MI Sigurdsson, E Simeonidis, N Sonnenschein… - Nature …, 2013 - nature.com
Multiple models of human metabolism have been reconstructed, but each represents only a
subset of our knowledge. Here we describe Recon 2, a community-driven, consensus '…

[HTML][HTML] Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways

…, A Dräger, A Ebrahim, N Sonnenschein… - PLoS computational …, 2015 - journals.plos.org
Escher is a web application for visualizing data on biological pathways. Three key features
make Escher a uniquely effective tool for pathway visualization. First, users can rapidly …

MEMOTE for standardized genome-scale metabolic model testing

…, RS Malik Sheriff, S Shoaie, N Sonnenschein… - Nature …, 2020 - nature.com
To the Editor—Reconstructing metabolic reaction networks enables the development of
testable hypotheses of an organism’s metabolism under different conditions 1. State-of-the-art …

[HTML][HTML] A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

…, C Lieven, ME Beber, N Sonnenschein… - Nature …, 2019 - nature.com
Genome-scale metabolic models (GEMs) represent extensive knowledgebases that provide
a platform for model simulations and integrative analysis of omics data. This study …

[HTML][HTML] Systems biology solutions for biochemical production challenges

ASL Hansen, RM Lennen, N Sonnenschein… - Current opinion in …, 2017 - Elsevier
… The majority of the metabolic engineering studies using omics data focus on common
biofuels that are produced natively (eg, ethanol, n-butanol or fatty acids) or on platform strains …

The Jewish‐Palestinian encounter in a time of crisis

R Halabi, N Sonnenschein - Journal of Social Issues, 2004 - Wiley Online Library
For over two decades the School for Peace at Neve Shalom/Wahat al‐Salam has been
bringing together Jews and Arabs for dialogue workshops. This article examines the unique …

[HTML][HTML] Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

…, V Siewers, JP Morrissey, N Sonnenschein… - Nature …, 2022 - nature.com
Genome-scale metabolic models (GEMs) have been widely used for quantitative exploration
of the relation between genotype and phenotype. Streamlined integration of enzyme …

[HTML][HTML] Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies

…, MMM Bisschops, N Sonnenschein… - Nature …, 2022 - nature.com
When conditions change, unicellular organisms rewire their metabolism to sustain cell
maintenance and cellular growth. Such rewiring may be understood as resource re-allocation …

[HTML][HTML] Personalized whole-cell kinetic models of metabolism for discovery in genomics and pharmacodynamics

…, DC Zielinski, N Sonnenschein, N Jamshidi… - Cell systems, 2015 - cell.com
Understanding individual variation is fundamental to personalized medicine. Yet interpreting
complex phenotype data, such as multi-compartment metabolomic profiles, in the context of …

[HTML][HTML] Analysis of genetic variation and potential applications in genome-scale metabolic modeling

…, MJ Herrgård, N Sonnenschein - … in bioengineering and …, 2015 - frontiersin.org
Genetic variation is the motor of evolution and allows organisms to overcome the environmental
challenges they encounter. It can be both beneficial and harmful in the process of …