User profiles for R. Retkute

Renata Retkute

Research Associate, University of Cambridge
Verified email at cam.ac.uk
Cited by 2148

A modelling framework to assess the likely effectiveness of facemasks in combination with 'lock-down'in managing the COVID-19 pandemic

ROJH Stutt, R Retkute, M Bradley… - … of the Royal …, 2020 - royalsocietypublishing.org
… Given the wide variation in quoted values for COVID-19's R 0 [38], we consider two cases: R
… 0 ) is 4.0, our analyses show that the best reductions in the R e occur when facemasks are …

A global profile of replicative polymerase usage

…, CA Müller, I Miyabe, T Brooks, R Retkute… - Nature structural & …, 2015 - nature.com
… Position of incorporated ribonucleotides is shown as 'r'. … Custom R scripts (available on
request) were used to identify origins: polymerase usage ratio data from each strand (calculated …

[PDF][PDF] Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment

T Natsume, CA Müller, Y Katou, R Retkute, M Gierliński… - Molecular cell, 2013 - cell.com
Centromeres play several important roles in ensuring proper chromosome segregation. Not
only do they promote kinetochore assembly for microtubule attachment, but they also …

The dynamics of genome replication using deep sequencing

…, M Hawkins, R Retkute, S Malla, R Wilson… - Nucleic acids …, 2014 - academic.oup.com
Eukaryotic genomes are replicated from multiple DNA replication origins. We present
complementary deep sequencing approaches to measure origin location and activity in …

[HTML][HTML] Approximate Bayesian Computation for infectious disease modelling

A Minter, R Retkute - Epidemics, 2019 - Elsevier
… We present a tutorial on coding practice for ABC in R and three case studies to illustrate
the … Within the while loop, we utilise existing R functions to propose values from the prior …

Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light?

R Retkute, SE Smith-Unna, RW Smith… - Journal of …, 2015 - academic.oup.com
… The rate of dark respiration R D is known to vary depending on acclimation state, with low-light-acclimated
leaves having lower R D than high-light-acclimated leaves. R D can be …

[HTML][HTML] Exploring relationships between canopy architecture, light distribution, and photosynthesis in contrasting rice genotypes using 3D canopy reconstruction

AJ Burgess, R Retkute, T Herman… - Frontiers in plant …, 2017 - frontiersin.org
The arrangement of leaf material is critical in determining the light environment, and
subsequently the photosynthetic productivity of complex crop canopies. However, links between …

Mathematical modelling of whole chromosome replication

APS de Moura, R Retkute, M Hawkins… - Nucleic acids …, 2010 - academic.oup.com
All chromosomes must be completely replicated prior to cell division, a requirement that
demands the activation of a sufficient number of appropriately distributed DNA replication origins…

[HTML][HTML] Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees

…, H Zhang, KHK Chow, IY Kwak, R Retkute… - Cell systems, 2021 - cell.com
The recent advent of CRISPR and other molecular tools enabled the reconstruction of cell
lineages based on induced DNA mutations and promises to solve the ones of more complex …

Suboptimal acclimation of photosynthesis to light in wheat canopies

AJ Townsend, R Retkute, K Chinnathambi… - Plant …, 2018 - academic.oup.com
… However, first, improvements must be made for the accurate measurement of R d . This
also would allow for detailed studies on the acclimation of R d to a change in light levels. …