User profiles for S. G. Gaffney
Stephen G. GaffneyAssociate Research Scientist, Yale University Verified email at yale.edu Cited by 969 |
[HTML][HTML] Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up
Background Lung adenocarcinomas (LUADs) lead to the majority of deaths attributable to
lung cancer. We performed whole-exome sequencing (WES) and immune profiling analyses …
lung cancer. We performed whole-exome sequencing (WES) and immune profiling analyses …
Early and multiple origins of metastatic lineages within primary tumors
…, Y Bai, A Iamarino, SG Gaffney… - Proceedings of the …, 2016 - National Acad Sciences
Many aspects of the evolutionary process of tumorigenesis that are fundamental to cancer
biology and targeted treatment have been challenging to reveal, such as the divergence times …
biology and targeted treatment have been challenging to reveal, such as the divergence times …
[HTML][HTML] Mutation profiles in early-stage lung squamous cell carcinoma with clinical follow-up and correlation with markers of immune function
Background Lung squamous cell carcinoma (LUSC) accounts for 20–30% of non-small cell
lung cancers (NSCLCs). There are limited treatment strategies for LUSC in part due to our …
lung cancers (NSCLCs). There are limited treatment strategies for LUSC in part due to our …
[HTML][HTML] APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma
VL Cannataro, SG Gaffney, T Sasaki, N Issaeva… - Oncogene, 2019 - nature.com
Recent studies have revealed the mutational signatures underlying the somatic evolution of
cancer, and the prevalences of associated somatic genetic variants. Here we estimate the …
cancer, and the prevalences of associated somatic genetic variants. Here we estimate the …
Effect sizes of somatic mutations in cancer
VL Cannataro, SG Gaffney… - JNCI: Journal of the …, 2018 - academic.oup.com
A major goal of cancer biology is determination of the relative importance of the genetic
alterations that confer selective advantage to cancer cells. Tumor sequence surveys have …
alterations that confer selective advantage to cancer cells. Tumor sequence surveys have …
Molecular biology and evolution of cancer: from discovery to action
…, NA Johnson, JN Fisk, SG Gaffney… - Molecular biology …, 2020 - academic.oup.com
Cancer progression is an evolutionary process. During this process, evolving cancer cell
populations encounter restrictive ecological niches within the body, such as the primary tumor, …
populations encounter restrictive ecological niches within the body, such as the primary tumor, …
Combined aurora kinase A (AURKA) and WEE1 inhibition demonstrates synergistic antitumor effect in squamous cell carcinoma of the head and neck
…, D Yang, F Zhu, R Mehra, R Sharma, SG Gaffney… - Clinical Cancer …, 2019 - AACR
Purpose: Human papillomavirus (HPV)-negative head and neck squamous cell carcinomas
(HNSCC) commonly bear disruptive mutations in TP53, resulting in treatment resistance. In …
(HNSCC) commonly bear disruptive mutations in TP53, resulting in treatment resistance. In …
[HTML][HTML] CDKN2A copy number loss is an independent prognostic factor in HPV-negative head and neck squamous cell carcinoma
… SG and JT verified the analytical methods. JY supervised the findings of this work. All …
Copyright: © 2018 Chen, Bindra, Mo, Hayman, Husain, Contessa, Gaffney, Townsend and Yu. This …
Copyright: © 2018 Chen, Bindra, Mo, Hayman, Husain, Contessa, Gaffney, Townsend and Yu. This …
Heterogeneity and mutation in KRAS and associated oncogenes: evaluating the potential for the evolution of resistance to targeting of KRAS G12C
Activating mutations in RAS genes are associated with approximately 20% of all human
cancers. New targeted therapies show preclinical promise in inhibiting the KRAS G12C variant. …
cancers. New targeted therapies show preclinical promise in inhibiting the KRAS G12C variant. …
[HTML][HTML] Harnessing case isolation and ring vaccination to control Ebola
As a devastating Ebola outbreak in West Africa continues, non-pharmaceutical control
measures including contact tracing, quarantine, and case isolation are being implemented. In …
measures including contact tracing, quarantine, and case isolation are being implemented. In …