User profiles for S. Takuno

Shohei Takuno

Fisheries Technology Institute
Verified email at soken.ac.jp
Cited by 3633

The patterns and causes of variation in plant nucleotide substitution rates

B Gaut, L Yang, S Takuno… - Annual Review of Ecology …, 2011 - annualreviews.org
… Here, we provide some results based on calculating K A and K S for O. sativa and Brachypodium
ortholog comparisons (Figure 1). These results provide a first superficial description of …

QTL‐seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

…, S Takuno, H Innan, LM Cano, S Kamoun… - The Plant …, 2013 - Wiley Online Library
… SNP-index graphs for R-bulk and S-bulk in the region between 2.39 and … S-bulk, we made
a graph of Δ(SNP-index) whereby the Δ(SNP-index) = (SNP-index of R-bulk) – (SNP-index of S

[HTML][HTML] The Capsella rubella genome and the genomic consequences of rapid mating system evolution

…, E Vello, LM Smith, SR Henz, J Steffen, S Takuno… - Nature …, 2013 - nature.com
The shift from outcrossing to selfing is common in flowering plants 1 , 2 , but the genomic
consequences and the speed at which they emerge remain poorly understood. An excellent …

Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly

S Takuno, BS Gaut - Molecular biology and evolution, 2012 - academic.oup.com
… was significantly correlated with both K S and K INT (r = 0.267, P < 10 −5 for K S ; r = 0.162,
… both K S and K INT remained lower for body-methylated genes in each bin (fig. 5B for K S , …

Gene body methylation is conserved between plant orthologs and is of evolutionary consequence

S Takuno, BS Gaut - … of the National Academy of Sciences, 2013 - National Acad Sciences
DNA methylation is a common feature of eukaryotic genomes and is especially common in
noncoding regions of plants. Protein coding regions of plants are often methylated also, but …

Artificial selection for a green revolution gene during japonica rice domestication

…, S Takuno, K Miura, S Katagiri… - Proceedings of the …, 2011 - National Acad Sciences
… We thank S. Mizuno for maintenance of the paddy field, H. … M Sweeney, S McCouch, The
complex history of the domestication … We thank S. Mizuno for maintenance of the paddy field, H. …

Evolutionary patterns of genic DNA methylation vary across land plants

S Takuno, JH Ran, BS Gaut - Nature plants, 2016 - nature.com
Little is known about patterns of genic DNA methylation across the plant kingdom or about
the evolutionary processes that shape them. To characterize gene-body methylation (gbM) …

[HTML][HTML] From many, one: genetic control of prolificacy during maize domestication

DM Wills, CJ Whipple, S Takuno, LE Kursel… - PLoS …, 2013 - journals.plos.org
… To test whether there is a compensatory increase in either the number of kernels per ear or
kernel weight, we assayed plants of the BC 2 S 3 family used for fine-mapping to determine if …

Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsisthaliana

TN Le, Y Miyazaki, S Takuno, H Saze - Nucleic acids research, 2015 - academic.oup.com
Genomes of higher eukaryotes, including plants, contain numerous transposable elements (TEs),
that are often silenced by epigenetic mechanisms, such as histone modifications and …

Independent molecular basis of convergent highland adaptation in maize

S Takuno, P Ralph, K Swarts, RJ Elshire, JC Glaubitz… - Genetics, 2015 - academic.oup.com
… p * ≈ 2 s / ξ 2 to a second order in s. The precise value can be … s family dies out; this is
equal to the probability that the families of all that individual’s children die out; since each child’s