User profiles for S. Takuno
Shohei TakunoFisheries Technology Institute Verified email at soken.ac.jp Cited by 3633 |
The patterns and causes of variation in plant nucleotide substitution rates
… Here, we provide some results based on calculating K A and K S for O. sativa and Brachypodium
ortholog comparisons (Figure 1). These results provide a first superficial description of …
ortholog comparisons (Figure 1). These results provide a first superficial description of …
QTL‐seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations
… SNP-index graphs for R-bulk and S-bulk in the region between 2.39 and … S-bulk, we made
a graph of Δ(SNP-index) whereby the Δ(SNP-index) = (SNP-index of R-bulk) – (SNP-index of S…
a graph of Δ(SNP-index) whereby the Δ(SNP-index) = (SNP-index of R-bulk) – (SNP-index of S…
[HTML][HTML] The Capsella rubella genome and the genomic consequences of rapid mating system evolution
The shift from outcrossing to selfing is common in flowering plants 1 , 2 , but the genomic
consequences and the speed at which they emerge remain poorly understood. An excellent …
consequences and the speed at which they emerge remain poorly understood. An excellent …
Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
… was significantly correlated with both K S and K INT (r = 0.267, P < 10 −5 for K S ; r = 0.162,
… both K S and K INT remained lower for body-methylated genes in each bin (fig. 5B for K S , …
… both K S and K INT remained lower for body-methylated genes in each bin (fig. 5B for K S , …
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
DNA methylation is a common feature of eukaryotic genomes and is especially common in
noncoding regions of plants. Protein coding regions of plants are often methylated also, but …
noncoding regions of plants. Protein coding regions of plants are often methylated also, but …
Artificial selection for a green revolution gene during japonica rice domestication
…, S Takuno, K Miura, S Katagiri… - Proceedings of the …, 2011 - National Acad Sciences
… We thank S. Mizuno for maintenance of the paddy field, H. … M Sweeney, S McCouch, The
complex history of the domestication … We thank S. Mizuno for maintenance of the paddy field, H. …
complex history of the domestication … We thank S. Mizuno for maintenance of the paddy field, H. …
Evolutionary patterns of genic DNA methylation vary across land plants
Little is known about patterns of genic DNA methylation across the plant kingdom or about
the evolutionary processes that shape them. To characterize gene-body methylation (gbM) …
the evolutionary processes that shape them. To characterize gene-body methylation (gbM) …
[HTML][HTML] From many, one: genetic control of prolificacy during maize domestication
… To test whether there is a compensatory increase in either the number of kernels per ear or
kernel weight, we assayed plants of the BC 2 S 3 family used for fine-mapping to determine if …
kernel weight, we assayed plants of the BC 2 S 3 family used for fine-mapping to determine if …
Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana
Genomes of higher eukaryotes, including plants, contain numerous transposable elements (TEs),
that are often silenced by epigenetic mechanisms, such as histone modifications and …
that are often silenced by epigenetic mechanisms, such as histone modifications and …
Independent molecular basis of convergent highland adaptation in maize
… p * ≈ 2 s / ξ 2 to a second order in s. The precise value can be … s family dies out; this is
equal to the probability that the families of all that individual’s children die out; since each child’s …
equal to the probability that the families of all that individual’s children die out; since each child’s …