- appendix1 sample and read stats
- Appendix2 p1 rep gene phylogenies
- Appendix2 p2 rep gene phylogenies
- Appendix2 p3 rep gene phylogenies
- Appendix 3 list of known plasmids and circular sequences found in 1869 sequences
- Appendix 4 automatic identification of identical circular sequences with different breaking points
- Appendix 5 Testing the validity of binning sequences based on predicted, annotated genes
- Appendix 6 No false positive circular element from sequencing and assembly of plasmid free Escherichia coli MG1655
- RHH_1, Replicase, Rep_1 phylogeny
- Rep_3, RepL phylogeny
- Rep_trans phylogeny
- list of know plasmids and circular sequences found in this study
- automatic identification of identical circular sequences with different break points
- test of the validity of classifying sequences based on predicted, annotated genes
- test of validity of circularization workflow in plasmid free E coli MG1655
- sample and read statistics