New Results
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity
Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan
doi: https://doi.org/10.1101/149948
Chang Sik Kim
1 The Hartree Centre, STFC Daresbury Laboratory, Warrington, WA4 4AD, UK
Martyn D. Winn
1 The Hartree Centre, STFC Daresbury Laboratory, Warrington, WA4 4AD, UK
Vipin Sachdeva
2 Computational Science Center, IBM T.J. Watson Research, Cambridge, MA, USA
Kirk E. Jordan
2 Computational Science Center, IBM T.J. Watson Research, Cambridge, MA, USA
Posted June 16, 2017.
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity
Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan
bioRxiv 149948; doi: https://doi.org/10.1101/149948
Subject Area
Subject Areas
- Biochemistry (11783)
- Bioengineering (8765)
- Bioinformatics (29249)
- Biophysics (15000)
- Cancer Biology (12136)
- Cell Biology (17441)
- Clinical Trials (138)
- Developmental Biology (9441)
- Ecology (14199)
- Epidemiology (2067)
- Evolutionary Biology (18332)
- Genetics (12259)
- Genomics (16813)
- Immunology (11885)
- Microbiology (28133)
- Molecular Biology (11621)
- Neuroscience (61060)
- Paleontology (452)
- Pathology (1875)
- Pharmacology and Toxicology (3240)
- Physiology (4970)
- Plant Biology (10436)
- Synthetic Biology (2890)
- Systems Biology (7350)
- Zoology (1653)